Package index • tlstractor

Extract tracts and ancestry dosages

extract_tracts(): Extract Local-Ancestry Tracts from Phased VCF and MSP (RFMix2/Gnomix)
extract_tracts_flare(): Extract Local-Ancestry Tracts from a FLARE VCF file
convert_gds_to_txt(): Convert Local-Ancestry Tracts Format from GDS to Text
convert_txt_to_gds(): Convert Local-Ancestry Tracts Format from Text to GDS

Munge external GWAS summary statistics

munge_sumstats(): Munge GWAS Summary Statistics to Align with GDS File

Run TLS-Tractor

tlstractor(): Run TLS-Tractor